IL_6I7O_309

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6I7O|1|BQ|U|3341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_309 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.2424

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6I7O|1|BQ|G|3340
6I7O|1|BQ|U|3341
6I7O|1|BQ|A|3342
*
6I7O|1|BQ|U|3363
6I7O|1|BQ|C|3364

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L24-A