IL_6I7O_316
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_316 not in the Motif Atlas
- Homologous match to IL_5TBW_376
- Geometric discrepancy: 0.1582
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
6I7O|1|BR|U|32
6I7O|1|BR|U|33
6I7O|1|BR|C|34
6I7O|1|BR|C|35
6I7O|1|BR|C|36
*
6I7O|1|BR|G|41
6I7O|1|BR|A|42
6I7O|1|BR|U|43
6I7O|1|BR|C|44
6I7O|1|BR|A|45
Current chains
- Chain BR
- 5S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain BI
- 60S ribosomal protein L5
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: