IL_6I7O_325
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_325 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0944
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|YQ|C|31
6I7O|1|YQ|U|32
6I7O|1|YQ|G|33
6I7O|1|YQ|A|34
6I7O|1|YQ|A|35
6I7O|1|YQ|C|36
6I7O|1|YQ|U|37
6I7O|1|YQ|U|38
*
6I7O|1|YQ|A|45
6I7O|1|YQ|U|46
6I7O|1|YQ|C|47
6I7O|1|YQ|A|48
6I7O|1|YQ|A|49
6I7O|1|YQ|U|50
6I7O|1|YQ|A|51
6I7O|1|YQ|A|52
6I7O|1|YQ|G|53
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XJ
- 60S ribosomal protein L13-A
- Chain XP
- 60S ribosomal protein L42-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XR
- 60S ribosomal protein L28
Coloring options: