IL_6I7O_328
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_328 not in the Motif Atlas
- Homologous match to IL_8C3A_008
- Geometric discrepancy: 0.0846
- The information below is about IL_8C3A_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6I7O|1|YQ|C|125
6I7O|1|YQ|U|126
6I7O|1|YQ|G|127
*
6I7O|1|YQ|C|141
6I7O|1|YQ|C|142
6I7O|1|YQ|G|143
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XA
- 60S ribosomal protein L8-A
- Chain XH
- 60S ribosomal protein L25
- Chain XQ
- 60S ribosomal protein L15-A
- Chain YP
- 60S ribosomal protein L35-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: