IL_6I7O_329

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_329 not in the Motif Atlas

Homologous match to IL_5TBW_009

Geometric discrepancy: 0.1485

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6I7O|1|YQ|C|163
6I7O|1|YQ|A|164
6I7O|1|YQ|A|165
*
6I7O|1|YQ|U|257
6I7O|1|YQ|G|258

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XJ

60S ribosomal protein L13-A

Chain YP

60S ribosomal protein L35-A