IL_6I7O_331

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

6I7O|1|YQ|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_331 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.3076

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6I7O|1|YQ|U|177
6I7O|1|YQ|U|178
*
6I7O|1|YQ|A|238
6I7O|1|YQ|G|239
6I7O|1|YQ|U|240
6I7O|1|YQ|G|241

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XF

60S ribosomal protein L37-A

Chain XJ

60S ribosomal protein L13-A

Chain YP

60S ribosomal protein L35-A