IL_6I7O_335
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_335 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0952
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6I7O|1|YQ|G|404
6I7O|1|YQ|U|405
6I7O|1|YQ|G|406
6I7O|1|YQ|A|407
6I7O|1|YQ|A|408
6I7O|1|YQ|A|409
6I7O|1|YQ|U|410
*
6I7O|1|YS|A|13
6I7O|1|YS|C|14
6I7O|1|YS|G|15
6I7O|1|YS|G|16
6I7O|1|YS|A|17
6I7O|1|YS|U|18
6I7O|1|YS|C|19
Current chains
- Chain YQ
- 25S ribosomal RNA
- Chain YS
- 5.8S ribosomal RNA
Nearby chains
- Chain XX
- 60S ribosomal protein L17-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YG
- 60S ribosomal protein L32
Coloring options: