IL_6I7O_341

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_341 not in the Motif Atlas

Homologous match to IL_8C3A_023

Geometric discrepancy: 0.1088

The information below is about IL_8C3A_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6I7O|1|YQ|G|668
6I7O|1|YQ|U|669
6I7O|1|YQ|C|670
*
6I7O|1|YQ|G|792
6I7O|1|YQ|C|793
6I7O|1|YQ|U|794

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XJ

60S ribosomal protein L13-A

Chain XR

60S ribosomal protein L28

Chain YB

60S ribosomal protein L18-A

Chain YE

60S ribosomal protein L4-A