3D structure

PDB id
6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CUGAUG*CGGAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6I7O_346 not in the Motif Atlas
Homologous match to IL_5TBW_026
Geometric discrepancy: 0.134
The information below is about IL_5TBW_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6I7O|1|YQ|C|758
6I7O|1|YQ|U|759
6I7O|1|YQ|G|760
6I7O|1|YQ|A|761
6I7O|1|YQ|U|762
6I7O|1|YQ|G|763
*
6I7O|1|YQ|C|768
6I7O|1|YQ|G|769
6I7O|1|YQ|G|770
6I7O|1|YQ|A|771
6I7O|1|YQ|U|772
6I7O|1|YQ|G|773

Current chains

Chain YQ
25S ribosomal RNA

Nearby chains

Chain XJ
60S ribosomal protein L13-A
Chain XP
60S ribosomal protein L42-A
Chain XR
60S ribosomal protein L28

Coloring options:


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