IL_6I7O_357

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

6I7O|1|YQ|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_357 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.3644

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6I7O|1|YQ|C|977
6I7O|1|YQ|G|978
6I7O|1|YQ|U|979
6I7O|1|YQ|A|980
6I7O|1|YQ|U|981
6I7O|1|YQ|C|982
*
6I7O|1|YQ|G|1101
6I7O|1|YQ|A|1102
6I7O|1|YQ|A|1103
6I7O|1|YQ|G|1104

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YB

60S ribosomal protein L18-A

Chain YO

60S ribosomal protein L7-A