IL_6I7O_362
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_362 not in the Motif Atlas
- Geometric match to IL_5TBW_041
- Geometric discrepancy: 0.1083
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6I7O|1|YQ|A|1006
6I7O|1|YQ|U|1007
6I7O|1|YQ|U|1008
6I7O|1|YQ|A|1009
*
6I7O|1|YQ|U|1041
6I7O|1|YQ|U|1042
6I7O|1|YQ|C|1043
6I7O|1|YQ|U|1044
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain YD
- 60S ribosomal protein L10
- Chain YI
- 60S ribosomal protein L5
- Chain nb
- Transfer RNA; tRNA
Coloring options: