IL_6I7O_376

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6I7O|1|YQ|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_376 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4316

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|G|1234
6I7O|1|YQ|U|1235
6I7O|1|YQ|G|1236
6I7O|1|YQ|G|1237
6I7O|1|YQ|C|1238
*
6I7O|1|YQ|G|1250
6I7O|1|YQ|A|1251
6I7O|1|YQ|A|1252
6I7O|1|YQ|U|1253
6I7O|1|YQ|C|1254

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain YU

60S acidic ribosomal protein P0