IL_6I7O_377

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6I7O|1|YQ|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_377 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2347

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6I7O|1|YQ|G|1262
6I7O|1|YQ|A|1263
6I7O|1|YQ|G|1264
6I7O|1|YQ|U|1265
6I7O|1|YQ|G|1266
*
6I7O|1|YQ|C|1275
6I7O|1|YQ|U|1276
6I7O|1|YQ|C|1277

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains