IL_6I7O_398

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_398 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0904

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6I7O|1|YQ|G|1898
6I7O|1|YQ|G|1899
6I7O|1|YQ|A|1900
6I7O|1|YQ|A|1901
*
6I7O|1|YQ|U|2336
6I7O|1|YQ|C|2337

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XB

60S ribosomal protein L23-A

Chain YA

60S ribosomal protein L3