IL_6I7O_412

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6I7O|1|YQ|A|2397, 6I7O|1|YQ|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_412 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1237

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6I7O|1|YQ|G|2396
6I7O|1|YQ|A|2397
6I7O|1|YQ|A|2398
*
6I7O|1|YQ|U|2981
6I7O|1|YQ|A|2982
6I7O|1|YQ|C|2983
6I7O|1|YQ|C|2984

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XX

60S ribosomal protein L17-A

Chain YA

60S ribosomal protein L3