IL_6I7O_419

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6I7O|1|YQ|A|2715

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_419 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.3239

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6I7O|1|YQ|G|2714
6I7O|1|YQ|A|2715
6I7O|1|YQ|U|2716
*
6I7O|1|YQ|A|2740
6I7O|1|YQ|C|2741

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XP

60S ribosomal protein L42-A

Chain XV

60S ribosomal protein L29