IL_6I7O_427

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_427 not in the Motif Atlas

Homologous match to IL_8C3A_115

Geometric discrepancy: 0.1117

The information below is about IL_8C3A_115

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6I7O|1|YQ|C|2876
6I7O|1|YQ|G|2877
*
6I7O|1|YQ|U|2949
6I7O|1|YQ|G|2950
6I7O|1|YQ|G|2951

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain YA

60S ribosomal protein L3