IL_6I7O_429

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6I7O|1|YQ|A|2941, 6I7O|1|YQ|C|2942

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_429 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.124

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6I7O|1|YQ|C|2881
6I7O|1|YQ|U|2882
*
6I7O|1|YQ|A|2940
6I7O|1|YQ|A|2941
6I7O|1|YQ|C|2942
6I7O|1|YQ|G|2943

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XB

60S ribosomal protein L23-A

Chain YA

60S ribosomal protein L3