IL_6I7O_454

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_454 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1611

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6I7O|1|YQ|A|3342
6I7O|1|YQ|G|3343
6I7O|1|YQ|A|3344
6I7O|1|YQ|G|3345
*
6I7O|1|YQ|C|3360
6I7O|1|YQ|G|3361
6I7O|1|YQ|A|3362
6I7O|1|YQ|U|3363

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A

Chain XE

60S ribosomal protein L24-A

Chain YF

60S ribosomal protein L19-A