IL_6I7O_469

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

6I7O|1|2b|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2b|G|480
6I7O|1|2b|A|481
6I7O|1|2b|U|482
6I7O|1|2b|A|483
6I7O|1|2b|C|484
6I7O|1|2b|A|485
*
6I7O|1|2b|U|502
6I7O|1|2b|G|503
6I7O|1|2b|U|504
6I7O|1|2b|A|505
6I7O|1|2b|A|506
6I7O|1|2b|U|507
6I7O|1|2b|U|508

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Wb

40S ribosomal protein S9-A

Chain gb

40S ribosomal protein S30-A