IL_6I7O_477

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAGGUAAA*UUUAAAUAU

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|BQ|G|991
6I7O|1|BQ|A|992
6I7O|1|BQ|G|993
6I7O|1|BQ|G|994
6I7O|1|BQ|U|995
6I7O|1|BQ|A|996
6I7O|1|BQ|A|997
6I7O|1|BQ|A|998
*
6I7O|1|BQ|U|1050
6I7O|1|BQ|U|1051
6I7O|1|BQ|U|1052
6I7O|1|BQ|A|1053
6I7O|1|BQ|A|1054
6I7O|1|BQ|A|1055
6I7O|1|BQ|U|1056
6I7O|1|BQ|A|1057
6I7O|1|BQ|U|1058

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A

Chain BO

60S ribosomal protein L7-A

Chain BR

5S ribosomal RNA; 5S rRNA