IL_6I7O_481

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6I7O|1|BQ|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_481 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0878

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6I7O|1|BQ|G|1898
6I7O|1|BQ|G|1899
6I7O|1|BQ|A|1900
6I7O|1|BQ|A|1901
6I7O|1|BQ|G|1902
6I7O|1|BQ|U|1903
6I7O|1|BQ|C|1904
6I7O|1|BQ|G|1905
6I7O|1|BQ|G|1906
*
6I7O|1|BQ|C|2333
6I7O|1|BQ|U|2334
6I7O|1|BQ|G|2335
6I7O|1|BQ|U|2336
6I7O|1|BQ|C|2337

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3