IL_6I7O_482

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

6I7O|1|BQ|A|2207, 6I7O|1|BQ|A|2208, 6I7O|1|BQ|U|2209

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|BQ|C|2204
6I7O|1|BQ|U|2205
6I7O|1|BQ|G|2206
6I7O|1|BQ|A|2207
6I7O|1|BQ|A|2208
6I7O|1|BQ|U|2209
6I7O|1|BQ|G|2210
*
6I7O|1|BQ|C|2235
6I7O|1|BQ|G|2236
6I7O|1|BQ|C|2237
6I7O|1|BQ|G|2238

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AW

60S ribosomal protein L2-A

Chain m

Transfer RNA; tRNA