IL_6I7O_505

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6I7O|1|YQ|U|1015, 6I7O|1|YQ|C|1016, 6I7O|1|YQ|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|YQ|U|1014
6I7O|1|YQ|U|1015
6I7O|1|YQ|C|1016
6I7O|1|YQ|C|1017
6I7O|1|YQ|G|1018
*
6I7O|1|YQ|U|1034
6I7O|1|YQ|G|1035
6I7O|1|YQ|A|1036

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XG

60S ribosomal protein L11-B

Chain nb

Transfer RNA; tRNA