IL_6I7O_506
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 6I7O|1|YQ|G|2522, 6I7O|1|YQ|G|2585, 6I7O|1|YQ|G|2586
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_506 not in the Motif Atlas
- Homologous match to IL_8CRE_106
- Geometric discrepancy: 0.1772
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|YQ|A|2520
6I7O|1|YQ|U|2521
6I7O|1|YQ|G|2522
6I7O|1|YQ|A|2523
6I7O|1|YQ|A|2524
6I7O|1|YQ|G|2525
6I7O|1|YQ|C|2526
*
6I7O|1|YQ|G|2584
6I7O|1|YQ|G|2585
6I7O|1|YQ|G|2586
6I7O|1|YQ|U|2587
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XA
- 60S ribosomal protein L8-A
- Chain XH
- 60S ribosomal protein L25
- Chain XW
- 60S ribosomal protein L2-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: