IL_6I7V_013

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6I7V|1|AA|U|244, 6I7V|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_013 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6I7V|1|AA|G|242
6I7V|1|AA|A|243
6I7V|1|AA|U|244
6I7V|1|AA|U|245
6I7V|1|AA|A|246
6I7V|1|AA|G|247
*
6I7V|1|AA|C|277
6I7V|1|AA|G|278
6I7V|1|AA|A|279
6I7V|1|AA|C|280
6I7V|1|AA|G|281
6I7V|1|AA|A|282
6I7V|1|AA|U|283
6I7V|1|AA|C|284

Current chains

Chain AA

16S ribosmal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17