IL_6I7V_172

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6I7V|1|CA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_172 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1679

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6I7V|1|CA|G|1432
6I7V|1|CA|A|1433
6I7V|1|CA|A|1434
6I7V|1|CA|G|1435
*
6I7V|1|CA|C|1557
6I7V|1|CA|C|1558
6I7V|1|CA|U|1559
6I7V|1|CA|G|1560
6I7V|1|CA|C|1561

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2