IL_6I7V_239

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_239 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.065

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6I7V|1|DA|C|239
6I7V|1|DA|C|240
6I7V|1|DA|A|241
6I7V|1|DA|G|242
6I7V|1|DA|U|243
6I7V|1|DA|A|244
6I7V|1|DA|G|245
*
6I7V|1|DA|C|253
6I7V|1|DA|G|254
6I7V|1|DA|A|255
6I7V|1|DA|A|256
6I7V|1|DA|C|257
6I7V|1|DA|G|258

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DM

50S ribosomal protein L15