IL_6I7V_248

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6I7V|1|DA|G|801, 6I7V|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_248 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0554

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6I7V|1|DA|G|674
6I7V|1|DA|A|675
6I7V|1|DA|A|676
6I7V|1|DA|A|677
6I7V|1|DA|C|678
*
6I7V|1|DA|G|799
6I7V|1|DA|A|800
6I7V|1|DA|G|801
6I7V|1|DA|A|802
6I7V|1|DA|U|803
6I7V|1|DA|A|804
6I7V|1|DA|G|805
6I7V|1|DA|C|806

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15