IL_6I7V_316

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUUGAAGU*AUGGAG

Length

15 nucleotides

Bulged bases

6I7V|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_316 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.371

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6I7V|1|DA|C|2129
6I7V|1|DA|U|2130
6I7V|1|DA|U|2131
6I7V|1|DA|U|2132
6I7V|1|DA|G|2133
6I7V|1|DA|A|2134
6I7V|1|DA|A|2135
6I7V|1|DA|G|2136
6I7V|1|DA|U|2137
*
6I7V|1|DA|A|2154
6I7V|1|DA|U|2155
6I7V|1|DA|G|2156
6I7V|1|DA|G|2157
6I7V|1|DA|A|2158
6I7V|1|DA|G|2159

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA