IL_6I7V_416

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_416 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1392

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6I7V|1|CA|U|1004
6I7V|1|CA|C|1005
6I7V|1|CA|C|1006
6I7V|1|CA|C|1007
6I7V|1|CA|A|1008
6I7V|1|CA|A|1009
6I7V|1|CA|A|1010
6I7V|1|CA|G|1011
*
6I7V|1|CA|C|1150
6I7V|1|CA|A|1151

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CK

50S ribosomal protein L13

Chain CR

50S ribosomal protein L20