IL_6I9R_036

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I9R_036 not in the Motif Atlas

Geometric match to IL_7RQB_003

Geometric discrepancy: 0.2536

The information below is about IL_7RQB_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

6I9R|1|A|U|2744
6I9R|1|A|A|2745
6I9R|1|A|U|2746
*
6I9R|1|A|A|2802
6I9R|1|A|A|2803

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

39S ribosomal protein L28, mitochondrial