IL_6ID0_006
3D structure
- PDB id
- 6ID0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCC*GAC
- Length
- 7 nucleotides
- Bulged bases
- 6ID0|1|F|C|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ID0_006 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.1107
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6ID0|1|F|G|58
6ID0|1|F|G|59
6ID0|1|F|C|60
6ID0|1|F|C|61
*
6ID0|1|F|G|75
6ID0|1|F|A|76
6ID0|1|F|C|77
Current chains
- Chain F
- U6snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain G
- pre-mRNA
- Chain J
- Crooked neck-like protein 1
- Chain L
- Cell division cycle 5-like protein
- Chain O
- Pre-mRNA-splicing factor RBM22
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
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