IL_6ID1_008
3D structure
- PDB id
- 6ID1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUGA*UCUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ID1_008 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.2055
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
6ID1|1|F|G|88
6ID1|1|F|U|89
6ID1|1|F|G|90
6ID1|1|F|A|91
*
6ID1|1|H|U|7
6ID1|1|H|C|8
6ID1|1|H|U|9
6ID1|1|H|C|10
Current chains
- Chain F
- U6snRNA
- Chain H
- U2snRNA
Nearby chains
- Chain L
- Cell division cycle 5-like protein
- Chain M
- Pre-mRNA-splicing factor SYF2
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