IL_6IP5_004
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CC*GAGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_004 not in the Motif Atlas
- Geometric match to IL_8P9A_309
- Geometric discrepancy: 0.3795
- The information below is about IL_8P9A_309
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18824.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6IP5|1|1A|C|26
6IP5|1|1A|C|27
*
6IP5|1|1A|G|55
6IP5|1|1A|A|56
6IP5|1|1A|G|57
6IP5|1|1A|G|58
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2b
- 60S ribosomal protein L35
- Chain 2d
- 60S ribosomal protein L37
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