IL_6IP5_009

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_009 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2676

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6IP5|1|1A|G|179
6IP5|1|1A|C|180
6IP5|1|1A|C|181
*
6IP5|1|1A|G|256
6IP5|1|1A|C|257

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13

Chain 2b

60S ribosomal protein L35