IL_6IP5_042

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|C|1357
6IP5|1|1A|G|1358
6IP5|1|1A|G|1359
6IP5|1|1A|G|1360
*
6IP5|1|1A|C|1379
6IP5|1|1A|G|1380
6IP5|1|1A|U|1381
6IP5|1|1A|G|1382

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2U

60S ribosomal protein L27a