IL_6IP5_069

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_069 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.101

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6IP5|1|1A|U|1861
6IP5|1|1A|U|1862
6IP5|1|1A|U|1863
*
6IP5|1|1A|A|1871
6IP5|1|1A|G|1872
6IP5|1|1A|A|1873

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 2D

60S ribosomal protein L10-like

Chain 2V

60S ribosomal protein L29