IL_6IP5_092

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6IP5|1|1A|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_092 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3219

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6IP5|1|1A|C|2646
6IP5|1|1A|A|2647
6IP5|1|1A|G|2648
*
6IP5|1|1A|C|2685
6IP5|1|1A|G|2686
6IP5|1|1A|U|2687
6IP5|1|1A|G|2688

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2a

60S ribosomal protein L34