IL_6IP5_099

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6IP5|1|1A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|C|2867
6IP5|1|1A|G|2868
6IP5|1|1A|U|2869
6IP5|1|1A|A|2870
6IP5|1|1A|A|2871
6IP5|1|1A|C|2872
*
6IP5|1|1A|G|2877
6IP5|1|1A|G|2878
6IP5|1|1A|A|2879
6IP5|1|1A|U|2880
6IP5|1|1A|A|2881
6IP5|1|1A|A|2882
6IP5|1|1A|G|2883

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2j

60S ribosomal protein L37a

Chain 2m

Small subunit ribosomal RNA; SSU rRNA