IL_6IP5_119
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUG*CA
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_119 not in the Motif Atlas
- Geometric match to IL_4WF9_089
- Geometric discrepancy: 0.2145
- The information below is about IL_4WF9_089
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_15011.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 54
Unit IDs
6IP5|1|1A|U|4295
6IP5|1|1A|U|4296
6IP5|1|1A|G|4297
*
6IP5|1|1A|C|4314
6IP5|1|1A|A|4315
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1G
- 60S ribosomal protein L5
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2V
- 60S ribosomal protein L29
- Chain 2i
- 60S ribosomal protein L36a
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