IL_6IP5_123

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_123 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2353

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6IP5|1|1A|G|4405
6IP5|1|1A|U|4406
6IP5|1|1A|G|4407
*
6IP5|1|1A|U|4435
6IP5|1|1A|U|4436
6IP5|1|1A|U|4437
6IP5|1|1A|U|4438
6IP5|1|1A|U|4439

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2D

60S ribosomal protein L10-like