IL_6IP5_127

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6IP5|1|1A|A|4518, 6IP5|1|1A|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_127 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1178

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6IP5|1|1A|C|4458
6IP5|1|1A|U|4459
*
6IP5|1|1A|A|4517
6IP5|1|1A|A|4518
6IP5|1|1A|C|4519
6IP5|1|1A|G|4520

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2I

60S ribosomal protein L13a

Chain 2P

60S ribosomal protein L23