IL_6IP5_161

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6IP5|1|2m|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_161 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3143

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6IP5|1|2m|C|37
6IP5|1|2m|A|38
6IP5|1|2m|A|39
6IP5|1|2m|A|40
*
6IP5|1|2m|U|514
6IP5|1|2m|G|515
6IP5|1|2m|A|516
6IP5|1|2m|C|517
6IP5|1|2m|G|518

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9