IL_6IP5_195

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAC*GCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_195 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.252

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6IP5|1|2m|G|873
6IP5|1|2m|G|874
6IP5|1|2m|A|875
6IP5|1|2m|C|876
*
6IP5|1|2m|G|910
6IP5|1|2m|C|911
6IP5|1|2m|C|912

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2s

40S ribosomal protein S7

Chain 2v

40S ribosomal protein S11