IL_6IP5_198

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_198 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1442

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6IP5|1|2m|A|922
6IP5|1|2m|G|923
*
6IP5|1|2m|C|1019
6IP5|1|2m|A|1020
6IP5|1|2m|U|1021
6IP5|1|2m|U|1022

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3K

40S ribosomal protein S13

Chain 3M

40S ribosomal protein S15a

Chain 3P

40S ribosomal protein S27