IL_6IP5_232
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6IP5|1|2m|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_232 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.3739
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
6IP5|1|2m|C|1708
6IP5|1|2m|G|1709
6IP5|1|2m|C|1710
6IP5|1|2m|U|1711
*
6IP5|1|2m|A|1822
6IP5|1|2m|A|1823
6IP5|1|2m|A|1824
6IP5|1|2m|A|1825
6IP5|1|2m|G|1826
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2h
- 60S ribosomal protein L41
- Chain 3B
- 40S ribosomal protein S23
- Chain 3Q
- 40S ribosomal protein S30
Coloring options: