IL_6IP5_240

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCGCC*GCGGAGCG

Length

15 nucleotides

Bulged bases

6IP5|1|2m|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|C|1750
6IP5|1|2m|C|1751
6IP5|1|2m|C|1752
6IP5|1|2m|C|1753
6IP5|1|2m|G|1754
6IP5|1|2m|C|1755
6IP5|1|2m|C|1756
*
6IP5|1|2m|G|1777
6IP5|1|2m|C|1778
6IP5|1|2m|G|1779
6IP5|1|2m|G|1780
6IP5|1|2m|A|1781
6IP5|1|2m|G|1782
6IP5|1|2m|C|1783
6IP5|1|2m|G|1784

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 3H

40S ribosomal protein S6