IL_6IP5_251

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGGAGC*GGAACCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|G|4740
6IP5|1|1A|C|4741
6IP5|1|1A|G|4742
6IP5|1|1A|G|4743
6IP5|1|1A|A|4744
6IP5|1|1A|G|4745
6IP5|1|1A|C|4746
*
6IP5|1|1A|G|4953
6IP5|1|1A|G|4954
6IP5|1|1A|A|4955
6IP5|1|1A|A|4956
6IP5|1|1A|C|4957
6IP5|1|1A|C|4958
6IP5|1|1A|U|4959

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2Z

60S ribosomal protein L35a