IL_6IP5_253

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGUUCCUUU*AUUCGAA

Length

17 nucleotides

Bulged bases

6IP5|1|2m|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|U|112
6IP5|1|2m|G|113
6IP5|1|2m|G|114
6IP5|1|2m|U|115
6IP5|1|2m|U|116
6IP5|1|2m|C|117
6IP5|1|2m|C|118
6IP5|1|2m|U|119
6IP5|1|2m|U|120
6IP5|1|2m|U|121
*
6IP5|1|2m|A|343
6IP5|1|2m|U|344
6IP5|1|2m|U|345
6IP5|1|2m|C|346
6IP5|1|2m|G|347
6IP5|1|2m|A|348
6IP5|1|2m|A|349

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11